rs46863717 SNP Detail

Summary

• ID
  rs46863717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84441185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TCTTCTGGTG CTGTCTGAAC
  M
  GCTACAGTGT ACTAAGATGT AATAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145360627	ENSMUSSNP839445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss322745596	CHEV_8_86238455	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46863717					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84441185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	354 bp proximal
Ddx39a	DEAD box helicase 39a	621 bp upstream
Rr382392	regulatory region 382392	449 bp downstream
Rr401010	regulatory region 401010	418 bp upstream
Rr666291	regulatory region 666291	8 bp distal
Rr666292	regulatory region 666292	131 bp proximal
Rr666293	regulatory region 666293	1003 bp proximal
Tssr78284	transcription start site region 78284	635 bp upstream
Tssr78285	transcription start site region 78285	671 bp upstream
Tssr78286	transcription start site region 78286	683 bp upstream
Tssr78287	transcription start site region 78287	749 bp upstream
Tssr78288	transcription start site region 78288	948 bp upstream