rs46863720 SNP Detail

Summary

• ID
  rs46863720
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130369119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATTAT GTTGTTTGAA
  GTGTTGCATT TGTTCATCGG TGCCTCATAC TAATCTCTGT TCTTGTCATT CGTGTCACAC
  CCACCAACCC TGACACCGTT CCCAGGGAGC ATCTGGCTTA GACGGAAAGC CAGGATCCCG
  GGTGAGTCGG CCCCGCGTCC TGCTCCGACG TGCTCCGTGG ATGTGAATCA CGTGCTGGGA
  M
  CGAAAGACCC CTTCGTTCCT TGTGGTCTTT CCAGATGCTG AGGCGTCACT TAGGGCCAGA
  ATCAGAGGGG GGAGGTAGAT GAGGATGGTG GAGAGGGAGA CAGGAGGAGA GAGAAGGGGT
  CGCAACTCGA AAGTTTAGCC TGGGCTGCCA GAACATTTTC AGAAGCCCAA ACTTGAGGGT
  AGATCATTTA CTCAGTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135896421	ENSMUSSNP1731264	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46863720					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130369119 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	within coordinates
Rr585176	regulatory region 585176	507 bp distal
Rr585177	regulatory region 585177	1324 bp proximal
Rr585178	regulatory region 585178	1413 bp proximal