rs46864766 SNP Detail

Summary

• ID
  rs46864766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76801477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA ATCATTTTCT TGTGAAAGGC
  Y
  GTGTGGGGAA AAAAACCCAA TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146777272	ENSMUSSNP6206400	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320356665	CHEV_2_76809190	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46864766					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76801477 () rs orientation: forward

Symbol	Name	Function Class
Rr559724	regulatory region 559724	within coordinates
Rr559725	regulatory region 559725	210 bp distal
Tssr24823	transcription start site region 24823	1946 bp upstream
Tssr24824	transcription start site region 24824	1907 bp upstream
Tssr24825	transcription start site region 24825	1452 bp upstream
Tssr24826	transcription start site region 24826	1412 bp upstream
Tssr24827	transcription start site region 24827	1391 bp upstream
Tssr24828	transcription start site region 24828	1308 bp upstream
Tssr24829	transcription start site region 24829	1196 bp upstream
Ttn	titin	within coordinates