rs46864803 SNP Detail

Summary

• ID
  rs46864803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24340191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGTTGA CTGTGGTTGC
  TGGCGCGATG CTGTGAATGT CTCATCTCGA AAAGTCCATC TCACTTTGTT TCCCTGGCCC
  CGTGGTACCA ACTCTTTCCA TTTCTCACTT GACTGGACTG GCTCCGCCCC CATCCTTCAG
  CATTCTCAGT TCCGACTGCA CTGGTTTGCA GCTTCGGAAA ACAGTCCTCT GTTGTAAATA
  Y
  TCCGCTCGGG TGGCCCTACT TTTTTGATGC GGCCACAGCA TTCCCCCTGA TGGTGACCAG
  GACAGAGGGA AGAGACGTCT ACTGGCTGAG AGAGGCCCAG AGAGTCCACG GCAAGCCTCC
  TCTTCCCGTT TTCCTGACCA GGCTGGAAGA TGACCAGGCA GGTAGACAAT GGATCCATCC
  TCCGAGCACT GTGCTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60982638	NES16150965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	T		C
ss322120752	CHEV_7_25425785	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46864803					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982638	NES16150965	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24340191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	1624 bp distal
Cpgi18556	CpG island 18556	468 bp distal
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr155455	regulatory region 155455	1610 bp proximal
Rr167239	regulatory region 167239	1790 bp distal
Rr172826	regulatory region 172826	within coordinates
Rr172827	regulatory region 172827	1598 bp proximal
Tssr65020	transcription start site region 65020	1983 bp downstream
Tssr65021	transcription start site region 65021	1969 bp downstream
Tssr65022	transcription start site region 65022	549 bp downstream