rs46865083 SNP Detail

Summary

• ID
  rs46865083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42402992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCAATC CTAGGAGACA
  GAGGCAGGAG GATCTCTGAG TTCAGGCTAG TCAGTTTCAG GACAGCTAGG GCTACAAAGA
  GAAACCCTAT CTCAAAAATC AAATGTATGT ACATTCATAT GTATGTATAT GATAAAAAAT
  AAGGCAAATT GAACAATTTA GGAAAATAAA AATTTTAATG ACCATGAAGA AGTATTTTGG
  W
  AGGCTGCATT TTTTCCCCCA AACATTGCTT ATATGCACAC TGGAATGTTT TTAAATGATT
  TATTTATTTT TATTTTAAGT CCATGGGTGT TTTGCCTACA AGTATGTATG CATGAGGGTG
  CTGGATCCTC TTAGAACTGG AGTTACACAC AGTTGTGAGC TGCATGTGTG TGCTAGGAGT
  TAAAACGGGG TCCTGGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147079683	ENSMUSSNP2878816	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46865083					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42402992 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	409 bp proximal
Rr227589	regulatory region 227589	393 bp distal
Snx3	sorting nexin 3	within coordinates