rs46866120 SNP Detail

Summary

• ID
  rs46866120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167894552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGTAAA TATATAAAGT
  CAGAATGAAG ACCCGAAAGG CTGTAAGCCA AGCTGAAAGG CTTCCTCTTA GTAGACAGTC
  AGACAAGCTT TAGGCTCCAA CTTCATCTTG AAATTCTGTG AACTCTAGCC ACTGAGAGGA
  TGCTCAGGAG CCTGAGCAAG AGTAAGTAAC CTCCGACCTA CAGCCCTCCA GGCTGGTCAC
  Y
  CCAAGCGGCT GAGGCTCCTG GGAGACTTCC CCCATCACAA GGTTCTGTGC TGGGCAGTAG
  CTCAGTTTCA GCAAAGTCAC CCTCTCAAAC TCATAAGCCA CAGGGCACAT TTGCAAGGAT
  GAATGCAAGT TGCACAGGAA GGCTCTGGCA ACAGGCAGTT TCAATGTGAT ATCCCTTTTC
  TGCCTCCCAT TAATGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148265685	ENSMUSSNP6528268	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46866120					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167894552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1722 bp distal
Rr406967	regulatory region 406967	1762 bp distal
Rr570862	regulatory region 570862	1717 bp distal
Rr570863	regulatory region 570863	145 bp proximal
Rr570864	regulatory region 570864	242 bp proximal
Tssr27824	transcription start site region 27824	680 bp upstream