rs46866944 SNP Detail

Summary

• ID
  rs46866944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138082897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC AGTGTAAGTA GCTTGTTTAC
  Y
  GAAAGATAGT CTTTTATCCT CGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144537702	ENSMUSSNP2327573	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321703424	CHEV_5_138525863	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46866944					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138082897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	380 bp proximal
Rr124606	regulatory region 124606	within coordinates
Tssr49408	transcription start site region 49408	448 bp upstream
Tssr49409	transcription start site region 49409	538 bp upstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	449 bp upstream