rs46868055 SNP Detail

Summary

• ID
  rs46868055
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCTCCC CCCCCTTTTT
  TTCTTTTGTA ACCCAGTCTC ACCTTGAATT CATTTTATAG GTGAGGAAGA CCCTACCTTC
  ACCTCTCTCC CTCCTCTCGG GACAGACTGC AACAGCCATG TGCCAGCATA GCTGGGTTAT
  AAAACAGCTG GGTTTTAAAA CAGCTGCACA GCTACTCTCA AGACAAGACA TTCAAAGCAT
  K
  TTTGAAACTA AATTTTTGTT TTAGAAATGA GATAATTGTT CCTCAATCTA GCTCCTGTGT
  GTTTGTGTGT GTGTGCACAT ACAAGATGCA CCAGAGGTCA ATTGAGTGTC TTCTGCCTCT
  CACAGTGTTG GGGTTACAAG CCTGTGTCCA GCAATGCTTT TTTTTTTTTT AAATTGTTGT
  GGTTGTGTTA TTTTGTTTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092223	ENSMUSSNP728373	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46868055					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957633 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	753 bp distal
Rr568436	regulatory region 568436	1241 bp proximal
Rr568437	regulatory region 568437	1414 bp proximal
Rr568438	regulatory region 568438	1815 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1387 bp upstream