rs46868513 SNP Detail

Summary

• ID
  rs46868513
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52121415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAAAAA GCAACACTAC
  AAATTTGTTT ATAGCATTCA TATAATCAAG TTGACTTATT TAAAATTAGG CCAATGTTTG
  CTTCAGAACA TTCCGGAGTT AATCTCTCTA AAATATTTTA CTGGACCATG TATCAATTAT
  AGAATTATGT CATAGTTCAT ATTTTTCTTC CTTGCTGGCC TGTCTGTCTC AACTGAAGTA
  K
  CGAGGAGTAT AATATAGGGA CAAATGTGGT GGTACATTAA AAATTATAGG ACAGGAAGAT
  TTTTAAAAGC AAATCATATA GTAAGTCCTA GATAGTGCAG CAATTTGCTG CATGTGTAGG
  TTTGTGTGTG TGTGTGTGTG TGTGCCTGTG TGTAGGTTTC TGTGTGTGTG TGTGCCTATG
  TGTGTCTGTG TGTACCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215890	NES15722326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46868513					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215890	NES15722326	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52121415 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Rr327240	regulatory region 327240	1441 bp proximal
Rr328951	regulatory region 328951	664 bp proximal
Tssr141422	transcription start site region 141422	306 bp downstream
Tssr141423	transcription start site region 141423	354 bp downstream
Tssr141424	transcription start site region 141424	703 bp downstream