rs46869507 SNP Detail

Summary

• ID
  rs46869507
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105074200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTAATCG AACCATCTAG TAGCTGGTTC CCTCTGAAGT
  TTCCCTCAGG ATAGCTGGCG CTCTCGCTCT TCCCGACACA CGCAGTTTTA TCCGGTAAAG
  G
  GAATGATTAG AGGTCTTGGG GCCGAAAGGA TCTCAACCTA TTCTCAAACT TTAAATGGGT
  AAGAAGCCCG GCTCGCTGGC ATGGAGCCGG GCGTGGAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147491359	ENSMUSSNP6558592	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46869507					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105074200 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	1 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	182 bp downstream
Tssr95615	transcription start site region 95615	149 bp upstream