rs46869757 SNP Detail

Summary

• ID
  rs46869757
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGACAGC CTTCAAGGAA
  GCCAGTCCTA TTCTTCTTGT TCTTCTTGGC ACTAAGGAAA CCAGACATTC CTGAGAACAC
  TGAGATAGGA CCAAAAGCTT GCTTGGTTGC TTGATTTATT GGGTGTCACT TTGAGTCCTG
  GTTGGCCTGG AGTACTGAGA TAGGACCAGA AGCAGCTTTT ACTCCCTCCC TCCGCCCCCA
  C
  CCCCCTTCTC TAGATAGGGT GTCGCTATGA GTCCTGGCTG GCCTGGAACT ACATAAACTA
  GGCTGGCTTC AAACTCATAA ACTCTGCCTG CCTCTGTCTT CCGAATGCTG GGACTACGGA
  TGTGAGCTAC CATGCCCAGC CAGACCAGAA ATTGTCCTAA TGTTCCCAGC TGCACAGGAG
  GTGGCTGGAT ATGTCCCTGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145875089	ENSMUSSNP3350039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46869757					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220868 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	3 bp upstream
Nupr1	nuclear protein transcription regulator 1	1550 bp downstream
Rr655535	regulatory region 655535	1837 bp distal
Rr655536	regulatory region 655536	within coordinates
Rr655537	regulatory region 655537	197 bp proximal
Rr655538	regulatory region 655538	691 bp proximal
Tssr69045	transcription start site region 69045	1208 bp upstream
Tssr69046	transcription start site region 69046	1549 bp upstream
Tssr69047	transcription start site region 69047	1751 bp upstream