rs46870255 SNP Detail

Summary

• ID
  rs46870255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATGAAA TCTTTAGCCT
  CCAATAAAAT TGTTTTTATA TAGTAATAAT AATTACAGTT CTTCATGTTG TGGTGACCCC
  AACAATAAAA CCATGTTCCA TAACTGATTT TGCTAGTTAT GAATGTTGTG TAATGTCAAT
  ATCTGTATTT TCTGATGGTC TTAGGTGACC CACAGGCTGA GAACCACTGG GTTAAAAGCA
  Y
  TTGTTGCTCT CACAGATTTC AGGTCCCAGA CCTTTGGGTG GCTTATAGTC TTCTGTAACT
  CCAGTTCCAC GGGCATATGA TATCCAATTC TGGCCTCCAT GGGCACCTGC ACTCATACAC
  ATAGATTAAA AAGAAAAAAA GAAAAAACAA AAAAGCCCTC CAAATGTCAT TGTCTCCTCC
  AGCTTTACCT GATCACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135869003	ENSMUSSNP6795555	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46870255					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk1	alpha-kinase 1			Intron
				Noncoding-Transcript-Variant
Tssr35586	transcription start site region 35586			540 bp upstream
Tssr35587	transcription start site region 35587			1656 bp downstream