rs46870655 SNP Detail

Summary

• ID
  rs46870655
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGATCGA GGCGCGCGCG
  CACACCCACA CACCCATACA CCACATGCAC AGGCAAAACA ATCATACACA TAAAATAAAT
  GTCAAAAAAA TGTTTAAGCT GTATATAAAT AATGGAGTTT TGATTTGGAG ACGTGATATT
  CATTTGTAGA CCCAGATGGC CTTCAAGATG AGGATTAGAA CTCGGATTGC CTTAGTCGAC
  K
  AACCTCTCAG AAGATTTTGA GGCGAAATGA TCAAATTTAT TGTTCATAGG TGGCAACCTG
  GCGATAAAGA CAAGTCCACG GGAAAAGCCT AACCTCAACC TCCAAGATAG AATCTCCCGC
  CAGCGCTGAA AGTACCTGCG GGGGGAGGAA GGGGGGGGGA GAACGCACAG GGCCTGCGCG
  CACCTCCCCG CGGCGAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427222	NES16810951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46870655					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427222	NES16810951	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	11 bp proximal
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	121 bp upstream
Rr401544	regulatory region 401544	68 bp upstream
Rr683554	regulatory region 683554	within coordinates
Rr683555	regulatory region 683555	807 bp proximal
Tssr86287	transcription start site region 86287	223 bp upstream