rs46872244 SNP Detail

Summary

• ID
  rs46872244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:109690794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA AGCTGCAAGA GAACTCAGCC
  R
  TGGATACCTG CCGCTACTCA CATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61450577	NES16836847	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46872244					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61450577	NES16836847	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:109690794 () rs orientation: forward

Symbol	Name	Function Class
Gm39427	predicted gene, 39427	within coordinates
Gm68591	predicted gene, 68591	within coordinates
Rr401695	regulatory region 401695	711 bp upstream
Rr687008	regulatory region 687008	600 bp proximal
Rr687009	regulatory region 687009	829 bp proximal
Rr687010	regulatory region 687010	875 bp proximal
Tssr87256	transcription start site region 87256	116 bp downstream
Tssr87257	transcription start site region 87257	86 bp downstream
Tssr87258	transcription start site region 87258	70 bp downstream