rs46873885 SNP Detail

Summary

• ID
  rs46873885
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4296331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCAGCCTCTG AAGCCTGGGT
  S
  CCGCCACTCT ACCCTCAGTG GAAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075442	NES16047348	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	G	C	G	G	G	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46873885					SNP	C	G	G	C	G	G	C	G	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075442	NES16047348	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4296331 () rs orientation: forward

Symbol	Name	Function Class
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	858 bp downstream
Map2k7	mitogen-activated protein kinase kinase 7	within coordinates
Tgfbr3l	transforming growth factor, beta receptor III-like	1883 bp upstream
Tssr76110	transcription start site region 76110	1857 bp upstream
Tssr76111	transcription start site region 76111	1892 bp upstream
Tssr76112	transcription start site region 76112	1917 bp upstream