rs46874722 SNP Detail

Summary

• ID
  rs46874722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79659969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCCAGT GGCCTTGAAT
  TCCGACCCAG AACTCCACCC TCTGACCTGA ATCACAGGAG AAGAATGGGA ACCCCACCTA
  TGGAGGGGAG ACACCCTTTC TCCAGAGGTC ATGTCTGACT GTTGGACAAC AAGGGCCATA
  AAATACTGCA TATGTATCAG TCAGCCAGGA AACATGGGTG CATAGCAGCT CTGGGCCGGC
  R
  GATGGGAGTC AGCTGGAAGG CCAGTGACTG AGCACCCAGG AACAGCAGGG TTCAATGAGC
  CAGTCTTGAC TAATACTTGC TGTATATCTT AGGACTGCCT ATCCACACAG AATGAAATCC
  TCCCAATTTC AGAAGAGCTG TGGAAGGGAA AAGGGATTAC CCTCCACAAC ACTGCTAGGA
  GTGCTGGGAA AGCCCAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386561	NES15268640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46874722					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386561	NES15268640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79659969 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Tssr94403	transcription start site region 94403	1456 bp downstream
Tssr94404	transcription start site region 94404	453 bp upstream
Tssr94405	transcription start site region 94405	538 bp upstream
Tssr94406	transcription start site region 94406	569 bp upstream
Tssr94407	transcription start site region 94407	1871 bp upstream
Tssr94408	transcription start site region 94408	1983 bp upstream