rs46874800 SNP Detail

Summary

• ID
  rs46874800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGAAAG TGAAATTACT
  GATCTAAGCC AATTAAGTAA TTTAACCCAA TGAGTGTGGC AGAGGCTGAA CAACGCATTT
  CCTAAAAGTT GAAGTGAACG CAGTTATTTT TGACTAGAGA ATTTCAGGAT GCTCATTTGG
  CATCAGAGGT TCAGGATCGC TGTTGTAGGC TGTTAGCCAG GACAAAGGAA TTTTGGGTTT
  K
  CTGCTGACTT AAGAGAGCAA AGTAACATGC TGTCAGCATC ACTGTGGCTG GGTCTGTAGC
  ACAATGGGAG AACAAGAGTT TAGCATGTGC AAGATGACCC TGGAGTCATC TCCAGCACAT
  GCATAGATGA CTGGTAGGTA GTTAGATATA CCAACAGATA GATAGGCAGA GTCATAGACA
  GTTATTTTGT ACTCCAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss61805374	NES17736157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs46874800					SNP	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805374	NES17736157	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1894 bp proximal
Rr388456	regulatory region 388456	796 bp upstream
Rr480050	regulatory region 480050	1629 bp proximal