rs46875827 SNP Detail

Summary

• ID
  rs46875827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCGCCAT TCACAACCAA
  CCTGGGATGG GTTTATGATG CCAGCTACAT GGAAGGCTGA GGCAGGAGGA TTCTAAATTT
  AAGGCCAGCT GGGGCAACTG ACTGAGACCC TATCTCACAA TAAAAAGTAA ACGGAGACCT
  GAGAATTCAG CCTCGTGGTA GGGAGTCTGC CTAGCATGCC TTTGAAGCAC TAAATTCAAT
  Y
  TCTAGCATCG AAGAAAAGTC ATTAACGTTC CTTTGCCTCC TCTGACTCTG CCACAGGGTT
  CAGGCCAAGC ATCCTAGAAG CACAGTACAG AAAGTAGGCA TTCACCCTGA GCATGATGAG
  ACACACCTAG AGTCAGCCTA CCTTGAAGCT TTCAGAAATA TGACCCTCAG GCACCCCAGG
  TCCTAGAACT GATGGATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132716433	ENSMUSSNP546292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323830219	CHEV_11_99854019	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46875827					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	836 bp proximal
Krtap17-1	keratin associated protein 17-1	529 bp downstream
Tssr110721	transcription start site region 110721	1287 bp downstream