rs46876583 SNP Detail

Summary

• ID
  rs46876583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAAAGCT GGAACTACCA
  GGAGTAGGGA AAATCGCCAT CCAAGTACCT CTTTAGTGAT GTCCCACTGA GATGGAAATT
  TCATTTGTTT GTTTTTAATA GCAGCAAGAG CTGGAATGTA GCTCAGTATA TCACATATTT
  GCTTGCTATG AATGAAGCCT TGGGTGCGAT CCCCAGCTAT GGATAAACTA GGCGTGGCTG
  Y
  GCATGTCTGC CGTCCCAGTA CTTGGGAGGC AGAGATGGAA AAATCAGAAG TTCAAGGTCA
  TCTTTGGCTC TACAGTGAGT TCGAGGCCAG CTTGTGGTAC ATGGGACCAT GTATAAACAA
  ACAAACAAAC AAATAAATAA ATAAAATCTA GCAAAATGAC TTTCATGAGA CGAGTTGTCC
  TCTCTCCTGC CATTTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865116	ENSMUSSNP5894472	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320954694	CHEV_3_127202790	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46876583					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293521 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	522 bp upstream
Cpgi13791	CpG island 13791	463 bp distal
Rr584800	regulatory region 584800	381 bp distal
Tssr35576	transcription start site region 35576	834 bp upstream
Tssr35577	transcription start site region 35577	801 bp upstream
Tssr35578	transcription start site region 35578	779 bp upstream
Tssr35579	transcription start site region 35579	735 bp upstream