rs46877676 SNP Detail

Summary

• ID
  rs46877676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65433204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCTTAC AGTTGATAAC
  ATGGCTTACT GTATGAGCAT CAGGCTTAGC TTCCTCATGA TAGCTAAGTT CTATTAGCAA
  AATCTTCCTA AGGAGAGCCC CAGATCTTTG CAAGTAAAAT GGAGAGACTC AGTCTGCTTC
  TGATTGGTCT TCTCTGGCTC TCCCCCAAGC CAGCTCAGGA CTCCAGCCAG CTGTTTTTAT
  Y
  ACTCTTCTAA CACTCATGCT CTGCCATCCC ACTTCAGCCT GAGGTGAACT CTCCTGAAGC
  CCTGAAAAGT CTTCTGATGG AGTCTACCAT CACCTTCTCC TGAAGCTCTG TAAATACTCA
  CACACACACC TGACAAATTA CAGACAAGGG AGAAAGGCCA ACGTGGGATG TTGGACCTTT
  TGTTTAAAGT ACAGAATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
ss52441340	NES15412153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ
rs46877676					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441340	NES15412153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65433204 () rs orientation: forward

Symbol	Name	Function Class
Rr260997	regulatory region 260997	804 bp distal
Rr267826	regulatory region 267826	within coordinates
Rr387347	regulatory region 387347	within coordinates