rs46877962 SNP Detail

Summary

• ID
  rs46877962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49316341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GAATATATCT GACTTTGTTT GGCATTGAAT CAACACACCC
  TTCTATCTAA CTCTTTTAGA TACTTTATGA AAATTAAATA CTTGTTCCAA AGCAACCATT
  Y
  TTCACATTTT CCCAAACTTC TCACTGAAAG GTGCTACATT TGAATTATCC TAACAATGAC
  CAGCCAAGAT GACACATACC TATAATCTCA AATACATGAG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148403017	ENSMUSSNP3274549	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46877962					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49316341 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50938	transcription start site region 50938	373 bp downstream