rs46878402 SNP Detail

Summary

• ID
  rs46878402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79585820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTTGTA AAGATAGAAC
  TCTCCCTCTC CTAGTCTCGT GGACATAGCA TTCATTACTT TGTCTCACAC TTCTCAAGGA
  TTCGGATGGA TCGATCGCTT CTCTAGCCCC ACAGTGCCCT TTGCTCCAGA GTGTCTGCAA
  GCCTTTTATT CTCAGCCTGC ACCCGGGAAT CTCCTCCGAC CCGGAAATCA TTGGGAAATC
  R
  TCTTGTTTTA TTGGCTCCTT TGTGCCAAAT TCTGGCGCAG GTGGCCACAT TCTGTTGTGC
  CAGGTGTGCC CCTGCCTCAG CCACAATGAA GATACCCGAG AGTCCAGGGT GAGTTGTTAG
  CTTTGGAAGG AGCTCTCTCT CCCACATAGT ATCACCACAG AATGGTCTCA GACACTTTAT
  TTTTAAGGGT CCTTCCTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61024855	NES16103383	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46878402					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024855	NES16103383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79585820 () rs orientation: forward

Symbol	Name	Function Class
Arpin	actin-related protein 2/3 complex inhibitor	808 bp upstream
Cpgi19319	CpG island 19319	677 bp distal
Gm31966	predicted gene, 31966	within coordinates
Rr649743	regulatory region 649743	992 bp distal
Rr649744	regulatory region 649744	within coordinates
Rr649745	regulatory region 649745	45 bp proximal
Tssr73196	transcription start site region 73196	817 bp upstream
Tssr73197	transcription start site region 73197	701 bp upstream