rs46878533 SNP Detail

Summary

• ID
  rs46878533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85869425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTGTCAC GGAGGTTTAA
  AAAAAAAATG CAGTGGGTGG AAATGTCAAA TCTAGCACAA AAGACATAGT GAGAAGGACA
  GAAGAAATGG GGGTGCGGAC ATTTCTATAA GTAATCAAAT GGATTTCTGG GCAAGCTTGT
  GTTCCTGCCA ATGCTCGGTC ACTCTAAAGA GGGTGAACGA CCAGTACACC TTGCAGCAAG
  Y
  GGCACCACAT TTACCTTTGC TCAACTAATC CTCCAAAGCA CAGCATTGCT GTAAGTCAGA
  ATTCCCTCCA CTTGCCTGGA ATCAGTATTA CGCCTTCATC TCTTCATGCC ATCCCTTTGC
  AATACAAATA GCTCAGGGTG ATTCAAAATC TACTCAGATA CCTGGACACA TCCTATCAAA
  TGTACAGAAG TTGCATCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451575	NES15428299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46878533					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451575	NES15428299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85869425 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	1816 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr258254	regulatory region 258254	225 bp distal
Rr265707	regulatory region 265707	175 bp proximal
Rr265708	regulatory region 265708	575 bp proximal
Rr268756	regulatory region 268756	1825 bp distal
Rr268757	regulatory region 268757	825 bp distal
Tssr114435	transcription start site region 114435	1982 bp upstream
Tssr117107	transcription start site region 117107	1845 bp downstream
Tssr117108	transcription start site region 117108	1855 bp downstream
Tssr117109	transcription start site region 117109	1909 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	1992 bp upstream