rs46879610 SNP Detail

Summary

• ID
  rs46879610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102489435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGCCCCTCGG AGCGCTGGCC GCGAGCCGCT CACGGGACCG CGCGCGGTGG
  R
  AAGCCGGGAC GTGGATTAGC GCCCGCAGCA GCCTCCCGCG CGCGCCGAGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147119750	ENSMUSSNP2795530	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46879610					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102489435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	610 bp upstream
Rr561713	regulatory region 561713	421 bp distal
Rr561714	regulatory region 561714	278 bp distal
Rr561715	regulatory region 561715	within coordinates
Rr561716	regulatory region 561716	202 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	851 bp downstream
Tssr19099	transcription start site region 19099	779 bp downstream
Tssr19100	transcription start site region 19100	510 bp downstream
Tssr19101	transcription start site region 19101	421 bp downstream
Tssr19102	transcription start site region 19102	395 bp downstream
Tssr19103	transcription start site region 19103	348 bp downstream
Tssr19104	transcription start site region 19104	326 bp downstream
Tssr19105	transcription start site region 19105	256 bp downstream
Tssr19106	transcription start site region 19106	238 bp downstream
Tssr19107	transcription start site region 19107	218 bp downstream
Tssr19108	transcription start site region 19108	182 bp downstream
Tssr19109	transcription start site region 19109	140 bp downstream
Tssr19110	transcription start site region 19110	123 bp upstream