rs46879678 SNP Detail

Summary

• ID
  rs46879678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19593467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGGTC TCTACCACTG
  AGCCATGTCC CCAGCCCCTC ACTGGGGGGT TCTAGGAAGA GACTCTACCA TTCAGCCCCA
  GCCCCTGCCA CCTGGCCTGA TGCCTTGCCT AGCCATTACT CTGCAGAGCA AGGTGGGACA
  CCAAGTTTTC CATTAGAGGC ACCAGGCTGA GACTCAAACA GGTCTCTCCA CTCATGTAGC
  Y
  AACTGTGTCT GTGACCTCAT GCAAACATCA GGGCCTGTCC AAGTCTTTCA CCCCAGCTTG
  GGGTGCTCAT TCTGTATGCC CAAGGACCCC CCACATAGAG AGCAGAGATC TGTGAAGTAC
  CTCCCTCTTT TTCAGTTTCC TTCCTGTCCT TTTCCTTAAT CCCCTCACCC CACCCCCACC
  CCATCCCCTC TGTCTATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60974216	NES16154137	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46879678					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60974216	NES16154137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19593467 () rs orientation: forward

Symbol	Name	Function Class
Ceacam16	CEA cell adhesion molecule 16	within coordinates
Cpgi18521	CpG island 18521	1366 bp distal
Gm19345	predicted gene, 19345	1192 bp downstream
Gm44659	predicted gene 44659	within coordinates
Tssr71042	transcription start site region 71042	1680 bp downstream
Tssr71043	transcription start site region 71043	1686 bp downstream
Tssr71044	transcription start site region 71044	1753 bp downstream