rs46879960 SNP Detail

Summary

• ID
  rs46879960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124787776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAATACAGGG GCTTTGGCAC CGTGGGGGAG GGGACTATCC CAGGCCTCTT
  W
  GGGTCTCATG TATACCGAAT TCAGACCCGA AAGCTCTGAA TTTCTGCATC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60941238	NES16184869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46879960					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60941238	NES16184869	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124787776 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17971	CpG island 17971	939 bp distal
Gm67878	predicted gene, 67878	877 bp upstream
Rr145728	regulatory region 145728	375 bp distal
Rr145729	regulatory region 145729	824 bp proximal
Spsb2	splA/ryanodine receptor domain and SOCS box containing 2	194 bp downstream
Tpi1	triosephosphate isomerase 1	within coordinates
Tssr58847	transcription start site region 58847	1880 bp downstream
Tssr58848	transcription start site region 58848	1857 bp downstream
Tssr58849	transcription start site region 58849	1053 bp downstream
Tssr63167	transcription start site region 63167	1669 bp downstream