rs46880121 SNP Detail

Summary

• ID
  rs46880121
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46307152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TCACATGCAT CCTCAAACTC
  C
  AGTGTCCAGT ACACCCCAAC CTAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146451679	ENSMUSSNP1882954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325822220	CHEV_19_46393203	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46880121					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46307152 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10993	CpG island 10993			126 bp distal
Psd	pleckstrin and Sec7 domain containing			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr548704	regulatory region 548704			132 bp distal
Tssr159621	transcription start site region 159621			753 bp upstream
Tssr159622	transcription start site region 159622			748 bp upstream
Tssr159623	transcription start site region 159623			651 bp upstream
Tssr159624	transcription start site region 159624			636 bp upstream
Tssr159625	transcription start site region 159625			566 bp upstream