rs46880293 SNP Detail

Summary

• ID
  rs46880293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137445947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA AGGGCTGAGA GGTGGGACCT
  K
  GGTTAAAGTC CCTGAGAGCA TCGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147617669	ENSMUSSNP4795794	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss321366747	CHEV_4_137274551	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46880293					SNP	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137445947 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1324 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	854 bp proximal
Rr100343	regulatory region 100343	653 bp proximal
Tssr39776	transcription start site region 39776	1281 bp downstream
Tssr39777	transcription start site region 39777	1255 bp downstream
Tssr39778	transcription start site region 39778	578 bp upstream
Tssr39779	transcription start site region 39779	608 bp upstream
Tssr39780	transcription start site region 39780	884 bp upstream
Tssr39781	transcription start site region 39781	1049 bp upstream