rs46881504 SNP Detail

Summary

• ID
  rs46881504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36726374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAGCCA CTTCATTGGG
  AGTCATCTAA AAGAGCTGTA AGACTAAAAT CGCCAGAGAA GGCCTTCCTT GGTGAAGCCC
  TCCACCCCAT GCCCACATGT GAGTTCAGCT GGACTGAGAG CCAGTCCCAA CCTGTTCCAG
  ACTCCACTTC ATCCTTCAAG CCTGGTGCCT GGACACCCTG AGGGAGGAAA CAGAGGACAG
  R
  GAAGCACTTC TGGCACCCAA CGCGGCCCAC AGCTGGAGGA AGCTAACATA CACCTGGGAG
  GATGCTGGTA CTTGATGGGC TGGGCTATGT CACAAGAGGG TGTGGTACAG ACCTTTGATG
  GGCTGGGCTA TGTCACAAGG GAGTGTGGTA CAAATGCTTG CCATATAATG CTTTGCTATT
  GCTCTCCTGG TTGGGTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147608105	ENSMUSSNP2335806	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46881504					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36726374 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	112 bp upstream
Cpgi7034	CpG island 7034	1206 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Gm49263	predicted gene, 49263	894 bp downstream
Tssr131078	transcription start site region 131078	853 bp downstream
Tssr131079	transcription start site region 131079	190 bp upstream
Tssr131080	transcription start site region 131080	231 bp upstream
Tssr131081	transcription start site region 131081	262 bp upstream
Tssr131082	transcription start site region 131082	537 bp upstream
Tssr131083	transcription start site region 131083	730 bp upstream
Tssr131084	transcription start site region 131084	776 bp upstream