rs46882068 SNP Detail

Summary

• ID
  rs46882068
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAGAG GAGCACATGA
  AATTGGGAGG GAAAATCAGT GAGGTGGATA GGAGCAGGTT GTAGTGAGGA GAGTAAGGAT
  GGGTTCATTA AAAGTGAATT ATATAAATGC ACAAAATTTT CAAACAAAAA TAATTTTAAA
  AAGAGAAGTC AAATGTGTGG TTGTAAGATA TATTTGTATT TAAAATAAGG TTATCAATTT
  S
  AAAATCAGAT TGTGAGAAAG TCTAATAGAA GTGCTCGTAA TGAGTGCTAA TATGTCAAAT
  TAATTTATTT AGTTTAATTT TCCTACTCAA GGATACATGT TTATTACAAT GTGTGACTGC
  TGCTGAAGGT TCCTTTAGGG CTTTGTCTGG AAGAAACATG GTCTATATTG ACAGAATATC
  ATGCAATAAA TGCAGTCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936911	NES16189345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46882068					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936911	NES16189345	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259578 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	111 bp upstream
Tssr58809	transcription start site region 58809	773 bp upstream
Tssr58810	transcription start site region 58810	799 bp upstream
Tssr58811	transcription start site region 58811	835 bp upstream
Tssr63019	transcription start site region 63019	1047 bp upstream
Tssr63020	transcription start site region 63020	115 bp upstream
Tssr63021	transcription start site region 63021	37 bp upstream
Tssr63022	transcription start site region 63022	within coordinates
Tssr63023	transcription start site region 63023	23 bp downstream
Tssr63024	transcription start site region 63024	126 bp downstream
Tssr63025	transcription start site region 63025	179 bp downstream
Tssr63026	transcription start site region 63026	190 bp downstream
Tssr63027	transcription start site region 63027	239 bp downstream
Tssr63028	transcription start site region 63028	252 bp downstream
Tssr63029	transcription start site region 63029	283 bp downstream
Tssr63030	transcription start site region 63030	313 bp downstream
Tssr63031	transcription start site region 63031	370 bp downstream
Tssr63032	transcription start site region 63032	394 bp downstream
Tssr63033	transcription start site region 63033	419 bp downstream
Tssr63034	transcription start site region 63034	438 bp downstream
Tssr63035	transcription start site region 63035	459 bp downstream
Tssr63036	transcription start site region 63036	513 bp downstream
Tssr63037	transcription start site region 63037	543 bp downstream
Tssr63038	transcription start site region 63038	580 bp downstream
Tssr63039	transcription start site region 63039	639 bp downstream
Tssr63040	transcription start site region 63040	697 bp downstream
Tssr63041	transcription start site region 63041	746 bp downstream
Tssr63042	transcription start site region 63042	771 bp downstream
Tssr63043	transcription start site region 63043	781 bp downstream
Tssr63044	transcription start site region 63044	803 bp downstream
Tssr63045	transcription start site region 63045	894 bp downstream
Tssr63046	transcription start site region 63046	913 bp downstream
Tssr63047	transcription start site region 63047	936 bp downstream
Tssr63048	transcription start site region 63048	964 bp downstream
Tssr63049	transcription start site region 63049	979 bp downstream
Tssr63050	transcription start site region 63050	1003 bp downstream
Tssr63051	transcription start site region 63051	1055 bp downstream