rs46882743 SNP Detail

Summary

• ID
  rs46882743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99141523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGG GAGGCGGATT
  TCTGAGTTCG AGGCCAGCCT GGTCTACAAA GTAAGTTCCA GGACAGCCAG GGCTATACAG
  AGAGACCCTG TCTCAAAAAA AAAAAAAAAA AAAAAAAGAA AGATTTCCTA TTCATTTATT
  CCTGTTGGGT GGCTAAGCCA GAAGCTGATA GAGATGGTAA GCCAGCATTT GCTCTGCCAT
  R
  CCCTGCCCTG CCCAGCCCAG CCTCAGGAGT GGACAGATTC TCAGCTGATG GCTCAGCTAC
  TTTTATCTCT CTGCCATCTT GTGGCTTAGA GCTCTTTGGG CATCCCCAAG GATAATTGAT
  GTTGCTGGGT GTGATATCTA TGTTGGGTGA CTGTTGACAT TGGGTCTCAT CTCTTTGATT
  TTCCTTGCCT TTGTTGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61445195	NES16826072	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		A	G		A
ss323135183	CHEV_9_99159889	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs46882743					SNP	A	A	A	A	A	G	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445195	NES16826072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99141523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep70	centrosomal protein 70			Intron
				Noncoding-Transcript-Variant
Gm18914	predicted gene, 18914			1475 bp downstream
Gm47199	predicted gene, 47199			5 bp downstream
Rr383815	regulatory region 383815			1720 bp downstream