rs46883072 SNP Detail

Summary

• ID
  rs46883072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84827596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAGGGA TCCTGGCCCT
  GCCCACGTCA CACCATCAAT AGAGGGATCC TGGCACTGCC CATGTCACAC CATCAATAGA
  GGGATCCTGG CACTGCCCAT GTCATACCAT CAATGGAGGG ATCCCAGCAC TGCCCATTGT
  CACACCATCA ATGGAGGGAT CCCAGCACTG CCCATTGTCA CACCATCAAT GGAGGGATCC
  Y
  GGCACTGCCC TCTGTTACAC CATCAATGGA GGGATCCTGG CACTGCCCTC TGTCACACCA
  TCAATGGAGG GATCCCGGCA CTGCCCTCTG TTACACCATC AATGGAGGGA TCCCGGCACT
  GCCCTCTGTT ACACCATCAA TGGAGGGATC CCGGCACTGC CCACTGTCAC ACCATCAATG
  GAGGGATCCT GGCACTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ
ss375391461	MGP_WTSI_8_86624866	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SM/J	SPRET/EiJ
rs46883072					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375391461	MGP_WTSI_8_86624866	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84827596 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	within coordinates
Gm39210	predicted gene, 39210	442 bp downstream