rs46883432 SNP Detail

Summary

• ID
  rs46883432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAGACA CTCCAAGTGG
  GGTTCTGCAG TGTCAGGGGT TGAATGGCCA CAGGATGTTG AAGCAGCCAT CCAAACACCC
  TCTTTTCCAA TACCATATCT GCCTTAGGTT GTATTTTTCT CCATCTACCT CAGTGGACAC
  ATCAAATCTC AACAGACTGG ATCAGAGATG ATACAAGAAC CCAGCTGTCT TCTGTAAGGG
  R
  AGATGGGAGA CTGTGCGTCA ACTGCTACCA TTTCTACTAC TTTGGGGGCC TGCAAATTAT
  TTCTCAGAAA TATATGTAAT TTATGCTAAC ATGAAATGGG TTCGTTTGGT TTTTTTTTAA
  ACAAATTAAC ATTTTTATAT CCTGCCAGCC TCAATTTCTA GTACTATTCA GTGGATACAA
  CTCCTGTAAG GAAAAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110125	ENSMUSSNP3015070	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46883432					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			511 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			592 bp downstream
Tssr36231	transcription start site region 36231			396 bp upstream
Tssr36232	transcription start site region 36232			1944 bp downstream
Tssr36233	transcription start site region 36233			1996 bp downstream