rs46883598 SNP Detail

Summary

• ID
  rs46883598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81330183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGGCC TGCCGGGAAC
  AACTTCCCTG GAAGCCAGCA AGGGCCAAGC ACCTCCTGGC AGACACCTGA CTCCCATCAG
  GGAGAGGCAA CACCTCTCCC TCTTCAACCT GTCCCTGGTT TCTCAGGGTG GCTTGGACAG
  CAGCTCTCCC TTTGGGTCCC TACAGTGCTT TCTGGAAATC CTGTAGGCCA CGTGGCAGGA
  Y
  GGTACTCTGT ACCCAGCTTT GCTGTCTGTG AGGAGTGACA GAGCCCCAGT GGGCAGTATT
  GGCTAGCACC AGTCCCCAGG ACTCCCAAAC CATTGTGCTA CCCACAGGAG GGCAGCCAGT
  CCCCAAGTGG CACCAGTTCA GAGATACCAT AAAGGCAGTG GACAATCAGC AGGCTTCTCC
  CCGATGCCGG CTGCTCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292430	NES16908864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46883598					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292430	NES16908864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81330183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	1151 bp proximal
Ncln	nicalin	within coordinates
Rr402085	regulatory region 402085	1935 bp upstream
Rr435684	regulatory region 435684	within coordinates
Rr435685	regulatory region 435685	501 bp distal
Rr435686	regulatory region 435686	1967 bp proximal
Tssr98629	transcription start site region 98629	1964 bp downstream
Tssr98630	transcription start site region 98630	1980 bp downstream