rs46884400 SNP Detail

Summary

• ID
  rs46884400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGTGCC TAGCCAGGGC
  TGTACAGTAA TGAGGTTGCT CAGACTCTGT GTGCTCTGCT AGGACCCTGT GTTTTACATG
  ACGTTACTGG CATGTGTGAC CTCTAACATG ACAATACCTG AAAAGGTTTT ACTTTGTATT
  AGTAGAAATC AAAGGATTAC TGAAATAAGT GTGTGTGCGC GTGTGTGTCA ATAAATTCAT
  Y
  ATTATTAAGC AGTTTACATT CTTGTGTGTC TAGTGATAGG GGTCCTTTCC AGACACCTAT
  GTGTGGATAA TTTGTGGGAC CCAGGCTTCC TTTTAACCTG GTGCCTTGCC TCTGAGAAGA
  ATTCCAAAGA GAACGGGCTA GGTGGATGAC CTGCAGTGGC AGACCATTGG CAGAGGAAGT
  GGATCTCTGC CCTTGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148811262	ENSMUSSNP3850060	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		T
ss324295890	CHEV_13_24466109	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46884400					SNP	C	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558223 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	359 bp proximal
Rr476039	regulatory region 476039	1101 bp proximal
Rr476040	regulatory region 476040	1700 bp proximal
Tssr4016	transcription start site region 4016	1810 bp upstream
Tssr118891	transcription start site region 118891	723 bp downstream
Tssr118892	transcription start site region 118892	1794 bp upstream
Tssr118893	transcription start site region 118893	1830 bp upstream
Tssr118894	transcription start site region 118894	1894 bp upstream
Tssr118895	transcription start site region 118895	1928 bp upstream
Tssr121784	transcription start site region 121784	1702 bp downstream
Tssr121785	transcription start site region 121785	1722 bp downstream
Tssr121786	transcription start site region 121786	1782 bp downstream