rs46884632 SNP Detail

Summary

• ID
  rs46884632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGAGCGG AACTTGCCCT
  TGCTCTCCCC AGGACACAGG GTTCCCTGCA TGGACCGCCA CTGACCTCCT CCTCAGGAAT
  GGGGATTTTC TCATCAAAGT AGGTGGTGAA GGGCTCCTCA GAGTCTCCAG TGGAATGTGG
  GAGGGATGAG TTGCTGTAGG CAGGGTTGAT GGCGCCAAGG CTGGCAGAGT CTCCATGGTC
  Y
  CCAGAAGCGC CATCTGAGTC AACATAACAA ACCCACCAAG GAGCTTTCTC AGTGACGCTG
  AACTCCAGCC CTTCACCCTG ATGGACACCT GACCCGCATC TGGTACTCGC TCCCTCCCCG
  TCACTGACAA CAACCTTAGG CCCAAAGCTA AATCATCTTA CAGCTCTGTG CACAAGAGAC
  CACCGTGGTT TTAGTACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148475148	ENSMUSSNP5651004	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46884632					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr509705	regulatory region 509705			392 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2			Coding-NonSynonymous
				Coding-Synonymous
				mRNA-UTR
Tssr136419	transcription start site region 136419			51 bp upstream