rs46884643 SNP Detail

Summary

• ID
  rs46884643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTACAGA TTCACTATCT
  CAAATTTAAA ATGTCACATA TTTTAAAAAT AATTGCAAGG ATAGTTGACG AAATACTCAC
  TGAGAACATT GATTTCAGAC AAAATCATTT TCCTGTGACC CTTCACATTT ACAGAATTGG
  GAGGTGCTAT TTGAGCAGAA TTATAATTTA ATAAGTGCAG AGACAGAGTT CTGTTTATCT
  Y
  TGGGTATCTA TCTTCTTAGG AAACAAATAA CAACAGCCAG AGTCCTGGAG AGATGGCTCA
  GCAGTCAAGA GTACTTGTTC TTGCAGAAGA TCCAAGTTCC ATTCCCAGAA TCTACTCGGT
  GACGTATAAC ACTCATAACT CCAGTTCTAG GGGAGACAAT GCCCTCTTTT GACTTCCTCA
  TGCACCAAAT ACACAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145647260	ENSMUSSNP4034474	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322398753	CHEV_7_117910317	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46884643					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366010 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1403 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1280 bp proximal
Rr653308	regulatory region 653308	990 bp proximal
Rr653309	regulatory region 653309	1618 bp proximal
Tssr68503	transcription start site region 68503	1260 bp upstream
Tssr68504	transcription start site region 68504	1303 bp upstream
Tssr68505	transcription start site region 68505	1335 bp upstream
Tssr68506	transcription start site region 68506	1366 bp upstream
Tssr68507	transcription start site region 68507	1812 bp upstream