rs46885563 SNP Detail

Summary

• ID
  rs46885563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133978766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGTTTT CCAGATACTA
  CATTTTTTTG CACTTTCTTC CACAGTAGTC CCTAAACCTT AAGTGATTTT TAGTTGTATC
  CATTGAAACT GGGGTCCACA ACTCTGCATT TTGATTGGTC ATGGTTTTCT ATAATGGTCT
  CAATCTGTTG CAAAGAGTTT TCTTGATTAG GAGACAAAAC TATCTGTGAG TAACAGGACA
  K
  ATGTTTATTT TTGGTTGTGA GTCTAGCCTT TAACGGCTGA GCCACCTCTC CAGCCCAGGA
  CAGATGTTTA TTGATTATTG TTGGTGATTG TGTCCCAGGC CTGTAACCTC AATTTGAACA
  TATGTAGTAT GTGCAGCATA TCAGATTTTA CACTTCAGTA GATCACTTGA GCAGGTTAAG
  TCCACAAGCT TTCCTCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147630474	ENSMUSSNP1690732	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss320512714	CHEV_2_133962582	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46885563					SNP	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133978766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	752 bp proximal