rs46885925 SNP Detail

Summary

• ID
  rs46885925
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52314036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA CCTAATGCTA ATGAAGCCTG
  T
  CTCCCGAGGC AGGCTTTTAA AAGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320303830	CHEV_2_52279544	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46885925					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52314036 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	988 bp upstream
Arl5a	ADP-ribosylation factor-like 5A	within coordinates
Cpgi11647	CpG island 11647	167 bp proximal
Rr556939	regulatory region 556939	within coordinates
Rr556940	regulatory region 556940	867 bp proximal
Rr556941	regulatory region 556941	932 bp proximal
Tssr494	transcription start site region 494	893 bp downstream
Tssr17726	transcription start site region 17726	980 bp upstream
Tssr17727	transcription start site region 17727	1217 bp upstream
Tssr24072	transcription start site region 24072	771 bp downstream
Tssr24073	transcription start site region 24073	787 bp downstream
Tssr24074	transcription start site region 24074	802 bp downstream