rs46885985 SNP Detail

Summary

• ID
  rs46885985
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC ATCACATGCT CCCATCCTGA
  C
  GACTGAAAGG GTTGGTGAGT GCATG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149175751	ENSMUSSNP2799104	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324382285	CHEV_13_64560729	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46885985					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1549 bp distal
Cpgi5783	CpG island 5783	400 bp distal
Gm7712	predicted gene 7712	633 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Gm59386	predicted gene, 59386	1993 bp upstream