rs46886183 SNP Detail

Summary

• ID
  rs46886183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145657013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCAAAC TTCCTTTGTA
  GCACAGGTTG ACCTCAAACT AGGAATTCTC CTGCCTCAGC CTCTCAATGC TTAGTAAGCA
  TCCTAGCTCA GTGCTGGGAT TACAGCCACT GCATGTGGCT TAGGAAAATA TTTTCCTGAC
  TGTTTGGCTA AATAGAAAAT CCAACCTACC TGAGACCCTC AGCCTCAGCC TCAGCACCCC
  Y
  TTCAGCCCTG AACCCCCTCG GCTTGTTTAA CTCTTCCAGG CCGGGAACAT GGCTCCCTTT
  TCAGCACCCT TTAACCACAC AATCATGAAG TGCTCATTCA CTGACAAGCC CTCTGGGTTT
  CTCTTCTCCT CAGTTCACTT AAGATAAAAG AAGTTGCAGA GAGAGAGGAG ACAGCAGTCT
  GTCCTCTGAC TGTACGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136040888	ENSMUSSNP1701407	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321009196	CHEV_3_145614222	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46886183					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145657013 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	304 bp distal
Rr586882	regulatory region 586882	22 bp proximal
Rr586883	regulatory region 586883	1404 bp proximal