rs46887852 SNP Detail

Summary

• ID
  rs46887852
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88186759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTAAAG AAACAAAAGT
  TAATTTTGTC TAAAGAATTT ATTTAGCCCC AACTAACCAG ATTATGGCCA TTTCAAGATA
  TGATCGAGGG GAAAAATTGT TATGTGGTAT TTTTGCATTT GTTGGTCGGT TGGTTGGTAA
  CAATCTTCAA AGTCCAGGAA GGTCCCTGAC AGGAAGGAAT GCTCTTTGGG AGCATCCTGT
  T
  CCCATCTCAT TCCCCACAGC CATGTGATTC CTCCACAGCC AGGTGGCACT TTTTTTTTTT
  TTTTTTTTTT TTTTTTTGCA GGCCCAGAAA AAGCCTGCTG TTCTCTGTGG CTTCCTGTTG
  GAAACAACAG TCTTCATGAA AAACAATCTG TCAAGGATCA GAATTGCTGC CTGCAACTTG
  GCGGGTGAGA CACGTGTCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144898825	ENSMUSSNP1580845	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46887852					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88186759 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Tssr7958	transcription start site region 7958	73 bp upstream
Tssr7959	transcription start site region 7959	95 bp upstream
Tssr7960	transcription start site region 7960	110 bp upstream
Tssr7961	transcription start site region 7961	157 bp upstream
Tssr7962	transcription start site region 7962	311 bp upstream
Tssr7963	transcription start site region 7963	339 bp upstream
Tssr7964	transcription start site region 7964	354 bp upstream
Tssr7965	transcription start site region 7965	390 bp upstream