rs46888228 SNP Detail

Summary

• ID
  rs46888228
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90919378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG TTTGCACATA CCTAAAAACC
  G
  CTACTTCCCG TCCACTCTGT AGCTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147290277	ENSMUSSNP1944799	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323387284	CHEV_10_90546261	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46888228					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90919378 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	746 bp upstream
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	362 bp downstream
Rr436976	regulatory region 436976	1098 bp distal
Rr436977	regulatory region 436977	449 bp distal
Tssr95222	transcription start site region 95222	1413 bp downstream
Tssr95223	transcription start site region 95223	488 bp downstream
Tssr95224	transcription start site region 95224	441 bp downstream
Tssr95225	transcription start site region 95225	413 bp downstream
Tssr98900	transcription start site region 98900	939 bp upstream
Tssr98901	transcription start site region 98901	855 bp upstream
Tssr98902	transcription start site region 98902	816 bp upstream
Tssr98903	transcription start site region 98903	743 bp upstream
Tssr98904	transcription start site region 98904	709 bp upstream