rs46888617 SNP Detail

Summary

• ID
  rs46888617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38633568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCCTG GTCTACAGAG
  TGAGTTCCAG GACAACCAGG GCTACACGGA GAAACCCTGT CTCGAAAAAC AAACAAACAA
  ACAAAAAACA AACAAACAAA AACAAAAACA AAAAACAAGA CAAAACAAAA AAACCAAAAT
  GAGATTGAAT TAGAAACCCA GAGACAGCCA TGAACTCCAA TACTTAATAA CGATTAATAG
  R
  AAAAAAAATC CAATGTCCAA AAATCATGAG CTGAAGAAAT CATAATTAAA ATTAGAAACT
  ATTTTGTAGT AAACAAACAA ACAAAAAAAA CCACAATTCA AATTCCCGTG ATAAAAGCTT
  TAAATGAATG TATCCCCCCC ACAAAGGTTT TGTTCTTGTG TAGGAGGGAA CACTGTAATA
  TCTAAGTATT ATGGACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	PWD/PhJ
ss60446724	NES16430053	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	PWD/PhJ
rs46888617					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446724	NES16430053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38633568 () rs orientation: forward

Symbol	Name	Function Class
Gm15803	predicted gene 15803	784 bp upstream
Rr515903	regulatory region 515903	359 bp distal
Rr515904	regulatory region 515904	462 bp distal
Tex55	testis expressed 55	within coordinates