rs46888725 SNP Detail

Summary

• ID
  rs46888725
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140426438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGATCCCC AGATCTCCAT
  CAGCCAGCAG AGATGGAGAC CTCGCAGAGA AGTTTCCAAA GTCTCTTAGA ACTGCTTCCC
  CCACCCCAAA AGAACTACAT CCCACCTAGG CAGTACATGT GCACACAGCC CCTCCCCAGG
  GTGCTAGGAG AGGTGGGTCA CCATGCTCAG GAGTCTGTCT CCTCCACTGG TGTGCACAGC
  M
  CTGTCTGCCG CTGGGACTGG GGGATCCGGT TGTTGGTTAC CAGGTCTCCT GGTCCCCACA
  CATCTCTCTT TCAGGTGCAA GTGCTAGATG CTCAAGAGGA CACATAAGCA GACCCGAAAC
  ACGGCTTGAC TTCCATGAGC GACAGGACCA GCCCTACAGC GACCATGGAT GTGCCGCGAT
  CACTGCTTCT TCACGAATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072235	NES16047743	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46888725					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072235	NES16047743	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140426438 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	836 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	1391 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr400701	regulatory region 400701	1386 bp downstream
Rr657754	regulatory region 657754	1509 bp distal
Rr657755	regulatory region 657755	968 bp distal
Rr657756	regulatory region 657756	1107 bp distal
Rr657757	regulatory region 657757	746 bp distal
Rr657758	regulatory region 657758	572 bp distal
Rr657759	regulatory region 657759	1390 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	within coordinates
Tssr69847	transcription start site region 69847	958 bp downstream
Tssr69848	transcription start site region 69848	1229 bp upstream
Tssr69849	transcription start site region 69849	1245 bp upstream
Tssr69850	transcription start site region 69850	1259 bp upstream
Tssr69851	transcription start site region 69851	1276 bp upstream
Tssr69852	transcription start site region 69852	1291 bp upstream
Tssr69853	transcription start site region 69853	1318 bp upstream