rs46888980 SNP Detail

Summary

• ID
  rs46888980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156265021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAAGCT GGGATTCTTA
  TCTCTCTCCC TGAATACACA CCTCAAGAGA GCCGCTGCCC TGGCAGCTCA CTGGCGCTGA
  AATCTGGTGG TGGTGGGTGT CTCCTTTTGT GTTTATTTTT ATTAAGCTGC TTTTCTCGTC
  AAGACCCTGA CCTTCCCATG CCTCAGTTTC TCTGTTTAGG CGGCTAGGAA GCTCAGTGTC
  S
  TGTCTTTGAG GCAGGTTGGA CTTTGGCTCA AAGCTCTAGA CCTGTCTTAT TACCAAGATT
  TAGGAATTCA CTGTTCTTTA AAAAATGTTA TATTTGATAT GCATGTGACC ATCAGAGAAT
  AACTTGTAAG AGTCAGGGAT TGAACTCAGG ACATCGGGCT TGGTAGGAAA TGGCTTTACC
  CAATGAGACA TCTTGCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148072191	ENSMUSSNP2161623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss320579313	CHEV_2_156248837	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46888980					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156265021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	1119 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21161	transcription start site region 21161	1987 bp downstream
Tssr21162	transcription start site region 21162	1978 bp downstream
Tssr21163	transcription start site region 21163	1958 bp downstream
Tssr21164	transcription start site region 21164	1927 bp downstream