rs46888986 SNP Detail

Summary

• ID
  rs46888986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:29752763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCACTC TCTACCATTT
  CTCTCTTCTC TTCTCTTCTC TTCTCTTCTC TTCTCTTCTC TTCTCTTCTC TTCTCTTCTC
  TTCTCCCCTC CCCTCCCCTC CCCTCATGGG ATAACTGTTA GAGGCTTCAG GAATTCTGTC
  TGTCATAAAT TTAATAATTA GCAAACTGGT TATAACTGAA TAATTTAATG ATAGTAATGG
  Y
  GGCTTGGCTT CTCAGACAAG GTGAAAGCTG TTTTAGGGGC AGATAGGGGG TGGGCAGGGC
  CAAAGCAAAT CTCAAAGATG GGGCCTTTGG CAGGATGCAA GGTGCGACTC CAGAGGGGGT
  TGGCAGGGGG TGGGGCCAGA CCTGCTTTTC AGGCCACCTG GCTGAACCAG TGGCTTCAGC
  AAGTCACAGA TGAGTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52214764	NES15216190	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss147048276	ENSMUSSNP4372693	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46888986					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214764	NES15216190	PERLEGEN	MM_PANEL	f	SNP	C/T