rs46889948 SNP Detail

Summary

• ID
  rs46889948
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCTGGA CTTTCTTTAG
  TTCCCTAACA GTCATTCCTC ATCCACCAGT GTCAGACTTA ATGTTCTGTG ACCTGCACAG
  AAAAGCCTTT TGGAATGTAT TCACTTAACA AAACTGTGGT TTCGACCAGC CAAAGGGCTA
  AGAGGGCCAT CAGACAGCAC CTGAGGCCTT TCTCTGCTTT GCTGTAACTC CTTGTTAATG
  A
  TTCTGAGACC AATGTGGAAG GAGCTTTGAT TTATGACTTT GTTCCTTTGC TATAAAAACT
  TCATGAAGCC GCTACCACAC TGGAACATGG ACTCTGATCT GTGTTCCTAG GCCGCGCTCA
  TTCACATCTG GCTCCAGAAT AAACTCCCTT TAACCTGCTT TGAGGTGAGT TACGTTTTTG
  AGGTATGGAC CAGACAGCGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149056699	ENSMUSSNP1246197	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46889948					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975143 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1802 bp downstream
Rr616963	regulatory region 616963	within coordinates
Rr616964	regulatory region 616964	357 bp proximal