rs46890818 SNP Detail

Summary

• ID
  rs46890818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATCATTT TGGGAGATGG AAATTATAAT CTCCATTTTA
  TCAATGAGAA AACCCATTTG CCTACATCAT CAGATGGTGG GACATTACTG GATTTTTATG
  M
  TGTTATGCAG ATCTATAGAT TTAAACTCAT AAAGGGGCAT CATGGTGAGT ACTGCTGGCC
  TGGCATATGT GCTGCCTCTG TTCTTCTACC TTACACCAAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936894	NES16189333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46890818					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936894	NES16189333	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260838 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	Intron
Tssr58808	transcription start site region 58808	1099 bp downstream
Tssr58809	transcription start site region 58809	462 bp downstream
Tssr58810	transcription start site region 58810	437 bp downstream
Tssr58811	transcription start site region 58811	348 bp downstream
Tssr63020	transcription start site region 63020	1375 bp upstream
Tssr63021	transcription start site region 63021	1297 bp upstream
Tssr63022	transcription start site region 63022	1258 bp upstream
Tssr63023	transcription start site region 63023	1203 bp upstream
Tssr63024	transcription start site region 63024	1105 bp upstream
Tssr63025	transcription start site region 63025	1073 bp upstream
Tssr63026	transcription start site region 63026	1052 bp upstream
Tssr63027	transcription start site region 63027	1014 bp upstream
Tssr63028	transcription start site region 63028	989 bp upstream
Tssr63029	transcription start site region 63029	961 bp upstream
Tssr63030	transcription start site region 63030	905 bp upstream
Tssr63031	transcription start site region 63031	875 bp upstream
Tssr63032	transcription start site region 63032	844 bp upstream
Tssr63033	transcription start site region 63033	830 bp upstream
Tssr63034	transcription start site region 63034	804 bp upstream
Tssr63035	transcription start site region 63035	789 bp upstream
Tssr63036	transcription start site region 63036	722 bp upstream
Tssr63037	transcription start site region 63037	689 bp upstream
Tssr63038	transcription start site region 63038	664 bp upstream
Tssr63039	transcription start site region 63039	596 bp upstream
Tssr63040	transcription start site region 63040	552 bp upstream
Tssr63041	transcription start site region 63041	505 bp upstream
Tssr63042	transcription start site region 63042	485 bp upstream
Tssr63043	transcription start site region 63043	468 bp upstream
Tssr63044	transcription start site region 63044	433 bp upstream
Tssr63045	transcription start site region 63045	353 bp upstream
Tssr63046	transcription start site region 63046	340 bp upstream
Tssr63047	transcription start site region 63047	319 bp upstream
Tssr63048	transcription start site region 63048	285 bp upstream
Tssr63049	transcription start site region 63049	261 bp upstream
Tssr63050	transcription start site region 63050	216 bp upstream
Tssr63051	transcription start site region 63051	194 bp upstream
Tssr63052	transcription start site region 63052	1308 bp downstream
Tssr63053	transcription start site region 63053	1418 bp downstream
Tssr63054	transcription start site region 63054	1585 bp downstream
Tssr63055	transcription start site region 63055	1612 bp downstream
Tssr63056	transcription start site region 63056	1653 bp downstream
Tssr63057	transcription start site region 63057	1686 bp downstream