rs46891002 SNP Detail

Summary

• ID
  rs46891002
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:63613818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA GAATACGTGG TTTTTATTTT
  W
  AAAAAAAAAA GCATAAGGAA ATACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149156864	ENSMUSSNP4417275	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319743838	CHEV_1_63621233	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46891002					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:63613818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam23	a disintegrin and metallopeptidase domain 23			Intron
				Noncoding-Transcript-Variant
Gm22281	predicted gene, 22281			829 bp downstream
Rr412179	regulatory region 412179			616 bp distal